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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8710017_8710388_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8710017 - 8710388
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TCCATTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GACTTCTGATTT
Flanking Amino Acid:
CMASLIVARQGMGDMAVSNS
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
74.1
37.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
82
0.72
0.8
76.3
32.1
Minor 5ss
46.6
-0.3
2.4
59
45.7
Minor BPS
48.4
-0
1.7
62.24
42

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013593
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110