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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87103521_87103607_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87103521 - 87103607
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTCATTTTTACA
Flanking Amino Acid:
ESVFRISEQEKLKKELDRLK
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
88.3
0.86
0.7
83.3
31.7
Minor 5ss
43.8
-0.7
3.2
64.9
46.4
Minor BPS
55.2
0.16
1.6
67
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245