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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87103766_87104805_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87103766 - 87104805
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TTTCTTTCAACA
Flanking Amino Acid:
YQELLKSAEREEQEESIYNL
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
84.2
0.77
0.8
81.3
29.2
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
65.3
0.48
1.5
76.67
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245