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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8710502_8723815_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8710502 - 8723815
Intron Length:
13314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTTTTATAAACT
Flanking Amino Acid:
QTLAVNYGSYIRLNSRGLIY
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.3
75.3
40.8
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84.8
0.78
0.7
76.5
32.1
Minor 5ss
38.2
-1.3
3
51.1
38.4
Minor BPS
59.7
0.38
1.9
81.55
39.8

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110
ENSAPLT00000018188
8694950 - 8840228
145279