Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8710502_8793388_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8710502 - 8793388

Intron Length:

82887

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAC|GTAAGTCCT

5'SS Class:

major

3'SS Sequence:

TCTCTGCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

TAACCATTAAAA

Flanking Amino Acid:

QTLAVNYGSYDFKTFSGVFP

Intron Amino Acid Position:

471

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

1.3

75.3

40.8

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

79.4

0.66

0.8

77.1

31.6

Minor 5ss

38.2

-1.3

51.1

38.4

Minor BPS

56.2

0.19

1.7

66.45

38.5

Associated Gene:

Gene:

RIN2

Ensembl Gene ID:

ENSAPLG00000014865

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013593

8694950 - 8840228

145279

ENSAPLT00000025864

8694950 - 8840228

145279