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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87106243_87106473_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87106243 - 87106473
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTATTTTAAAT
Flanking Amino Acid:
PNKEAIDTANRIEQQFQNVL
Intron Amino Acid Position:
628

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.3
39
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87
0.83
0.8
84.8
35.4
Minor 5ss
31.2
-2.2
3.3
40.2
45.7
Minor BPS
63.8
0.51
1.4
77.18
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245