Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87106629_87106880_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

87106629 - 87106880

Intron Length:

252

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

CTGTTAATACTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTTCTGTTAATA

Flanking Amino Acid:

KAICDYRQIEITIYKDDECV

Intron Amino Acid Position:

577

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

1.1

76.3

32.7

Major BPS

84.4

0.85

34.5

Major PPT

63.9

0.31

42.4

Minor 5ss

30.1

-2.3

2.7

34.9

41.1

Minor BPS

60.8

0.33

76.1

35.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020378

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038765

87097706 - 87113950

16245