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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87111140_87111256_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87111140 - 87111256
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTAATAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTCCTAATC
Flanking Amino Acid:
KLESQYSKLLNTSRNQERHL
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
70.7
0.47
1.1
72.2
36
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
71.4
0.65
1.6
82.62
30.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245