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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87111335_87111544_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87111335 - 87111544
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAGCAC
5'SS Class:
major
3'SS Sequence:
ATACCAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGTCTTTTGACC
Flanking Amino Acid:
SSLKEAKMSEIQMTAPLKLS
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
59
39.9
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
60.7
0.24
1
52.4
40.1
Minor 5ss
36.5
-1.5
3.4
49.6
47
Minor BPS
65.3
0.46
1.2
71.36
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245