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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87112224_87113086_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87112224 - 87113086
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTAC
5'SS Class:
major
3'SS Sequence:
TTTATTTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATT
Flanking Amino Acid:
KYYQADQLVQRVAKLRDELM
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
71.4
35
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.1
0.68
0.9
77.7
35.3
Minor 5ss
39.5
-1.2
3
52.7
44.5
Minor BPS
78.7
0.98
1.3
92.74
29.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245