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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87113242_87113557_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87113242 - 87113557
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
TCTGTTCATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTCTGTTCATT
Flanking Amino Acid:
LILARNALQSDTKRLESGLQ
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
62.2
43.9
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.7
0.67
0.9
77.7
35.8
Minor 5ss
36.5
-1.5
3
51.2
45.1
Minor BPS
45.6
-0.2
2.4
68.07
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020378
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038765
87097706 - 87113950
16245