Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87113652_87113783_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

87113652 - 87113783

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTGG

5'SS Class:

strong_major

3'SS Sequence:

TGGGATCACCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATTAAT

U12 Branch Point Sequence:

TTTTCCAAAATT

Flanking Amino Acid:

SFGNGTLEGNRLEMLQQIAN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

1.1

69.7

43.7

Major BPS

79.4

0.73

0.9

79.6

29.1

Major PPT

53.4

0.08

44.1

42.4

Minor 5ss

45.1

-0.5

2.6

58.7

45.8

Minor BPS

65.8

0.58

1.9

88.85

36.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020378

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038765

87097706 - 87113950

16245