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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8723882_8793388_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8723882 - 8793388
Intron Length:
69507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TCTCTGCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TAACCATTAAAA
Flanking Amino Acid:
GLLLASVFVTDFKTFSGVFP
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
73.8
36.6
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
79.4
0.66
0.8
77.1
31.6
Minor 5ss
47.6
-0.2
2.5
65
40.2
Minor BPS
56.2
0.19
1.7
66.45
38.5

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110
ENSAPLT00000018188
8694950 - 8840228
145279