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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87282899_87284230_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87282899 - 87284230
Intron Length:
1332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
CATTTGATTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTACCCATCACT
Flanking Amino Acid:
RLRQSLVMLQVLPQAVTHFE
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
77.8
0.63
0.9
74
40
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
55.7
0.26
2.1
79.77
41.5

Associated Gene:

Gene:
BEND6
Ensembl Gene ID:
ENSAPLG00000003662
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003740
87281664 - 87292590
10927