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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87284449_87285670_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87284449 - 87285670
Intron Length:
1222

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTTAT
U12 Branch Point Sequence:
ATGTCTATGACC
Flanking Amino Acid:
EDEEQQTEKQFKIEKWQIAL
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1.2
84.1
30.2
Major BPS
73.5
0.58
1.2
63.7
43.9
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
39.2
-1.2
2.8
50
46.3
Minor BPS
58.7
0.26
1.6
68.7
37

Associated Gene:

Gene:
BEND6
Ensembl Gene ID:
ENSAPLG00000003662
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003740
87281664 - 87292590
10927