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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87285864_87287674_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87285864 - 87287674
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGATAACT
5'SS Class:
major
3'SS Sequence:
CTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
TATATGTCATCT
Flanking Amino Acid:
MNQNEVQEIIGITKQLFPNT
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
0.9
76.1
32.5
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
30.7
-2.2
2.9
41.7
44.4
Minor BPS
43.1
-0.4
2.3
65.82
44.5

Associated Gene:

Gene:
BEND6
Ensembl Gene ID:
ENSAPLG00000003662
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003740
87281664 - 87292590
10927