Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87287789_87292561_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

87287789 - 87292561

Intron Length:

4773

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGCTTTTC

5'SS Class:

major

3'SS Sequence:

GAGACTATGGGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGTAAT

U12 Branch Point Sequence:

TACGACTGCACA

Flanking Amino Acid:

KPILGKDLNSDSVLKTKQY*

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.4

0.55

71.3

35.1

Major BPS

66.7

0.41

1.4

69.7

44.2

Major PPT

42.9

-0.4

1.7

39.9

43.3

Minor 5ss

38.3

-1.3

3.1

52.7

44.5

Minor BPS

43.2

-0.5

2.1

54.24

Associated Gene:

Gene:

BEND6

Ensembl Gene ID:

ENSAPLG00000003662

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003740

87281664 - 87292590

10927