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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87300307_87301135_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87300307 - 87301135
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AACTTTTTAATT
Flanking Amino Acid:
EEPNSSSYDHRNARRKDHID
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.5
0.75
0.8
79.2
32.9
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
68.5
0.66
1.1
74.5
36.9

Associated Gene:

Gene:
ZNF451
Ensembl Gene ID:
ENSAPLG00000003666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003784
87300196 - 87325252
25057