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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87301262_87307942_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87301262 - 87307942
Intron Length:
6681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGAT
5'SS Class:
major
3'SS Sequence:
TTTTCACCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTGCCTTACAT
Flanking Amino Acid:
QKEEKNKAFKEKVDSQYAHG
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66
39.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.5
0.8
0.7
82.7
27.9
Minor 5ss
29.9
-2.3
3.8
46.5
48.8
Minor BPS
58.3
0.34
1.9
76.73
45.7

Associated Gene:

Gene:
ZNF451
Ensembl Gene ID:
ENSAPLG00000003666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003784
87300196 - 87325252
25057