About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87308055_87308828_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87308055 - 87308828
Intron Length:
774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTTCTAACA
Flanking Amino Acid:
LCVDQWLKMPGLKPGTVNSG
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
78.3
0.64
0.9
73.9
34.4
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
64.8
0.46
1.6
76.34
34.4

Associated Gene:

Gene:
ZNF451
Ensembl Gene ID:
ENSAPLG00000003666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003784
87300196 - 87325252
25057