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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87308980_87310286_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87308980 - 87310286
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AGTTTGTTAATT
Flanking Amino Acid:
NGHLLLGHLKRFDHSPCDPT
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.2
0.7
0.7
73.9
31.2
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
60.6
0.41
2
78.48
38.1

Associated Gene:

Gene:
ZNF451
Ensembl Gene ID:
ENSAPLG00000003666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003784
87300196 - 87325252
25057