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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87310414_87311726_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87310414 - 87311726
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCCTCATCG
Flanking Amino Acid:
QQYTDHLLSKLNENDGHKKD
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.9
72.1
38.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
27.9
-2.5
3.9
39.5
45.9
Minor BPS
65.2
0.34
1.9
75.91
41.7

Associated Gene:

Gene:
ZNF451
Ensembl Gene ID:
ENSAPLG00000003666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003784
87300196 - 87325252
25057