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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87311865_87313459_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
87311865 - 87313459
Intron Length:
1595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTATGAA
5'SS Class:
major
3'SS Sequence:
TACAGAAGAAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TTCTACATTACA
Flanking Amino Acid:
HMSGKKHFLQKDGFPLPFPS
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.2
64.8
34.7
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
44.7
-0.3
1.1
35.2
37.9
Minor 5ss
33.8
-1.8
3
40.7
45.6
Minor BPS
49.6
-0
2.1
69.67
41.9

Associated Gene:

Gene:
ZNF451
Ensembl Gene ID:
ENSAPLG00000003666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003784
87300196 - 87325252
25057