About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87320243_87321378_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87320243 - 87321378
Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAACAT
U12 Branch Point Sequence:
CTCGGTTCAACA
Flanking Amino Acid:
EAADFALCVHAGRLDEHLPK
Intron Amino Acid Position:
911

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
58.4
0.21
1.2
65.6
39.7
Major PPT
78.8
0.65
0.9
73.7
36.9
Minor 5ss
42
-0.9
2.8
53.8
43.6
Minor BPS
45.2
-0.3
2
54.34
45

Associated Gene:

Gene:
ZNF451
Ensembl Gene ID:
ENSAPLG00000003666
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003784
87300196 - 87325252
25057