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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87345492_87346144_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87345492 - 87346144
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCATGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATGT
Flanking Amino Acid:
NSQDMRHISEGEREELNLTA
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
77.5
0.62
0.9
78.8
34.4
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
49.1
0.01
2
75.13
42.3

Associated Gene:

Gene:
BAG2
Ensembl Gene ID:
ENSAPLG00000003712
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003788
87340048 - 87346545
6498