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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87354698_87356000_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87354698 - 87356000
Intron Length:
1303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTAACATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACA
Flanking Amino Acid:
SVKEDLNVSEVFKYLADKYL
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
75.3
34.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.1
0.61
0.9
67.2
43.3
Minor 5ss
31
-2.2
3.6
46.7
48.6
Minor BPS
79.4
0.92
1
82.25
33.1

Associated Gene:

Gene:
RAB23
Ensembl Gene ID:
ENSAPLG00000003715
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003827
87353588 - 87363910
10323