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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87356084_87357559_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87356084 - 87357559
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATGTTTAAAA
Flanking Amino Acid:
IDLLDDSCIKNEEAEALAKK
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.8
29.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
77.9
0.63
0.9
72.9
37
Minor 5ss
38.1
-1.3
3.6
56.6
42
Minor BPS
56
0.18
1.8
66.7
39.4

Associated Gene:

Gene:
RAB23
Ensembl Gene ID:
ENSAPLG00000003715
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003827
87353588 - 87363910
10323