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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87362947_87363755_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87362947 - 87363755
Intron Length:
809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTATGTATT
5'SS Class:
major
3'SS Sequence:
TCGTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTGTATTAATC
Flanking Amino Acid:
IGVDFLERQIQVNDEDVRLM
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
77.6
36.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.4
0.75
0.8
81.4
34.9
Minor 5ss
50
-0
2.5
74.1
35.5
Minor BPS
56.9
0.2
1.7
66.42
39.9

Associated Gene:

Gene:
RAB23
Ensembl Gene ID:
ENSAPLG00000003715
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003827
87353588 - 87363910
10323