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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87391950_87392666_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
87391950 - 87392666
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTGAGTAGG
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
CTAATATTAACT
Flanking Amino Acid:
FESFAVDRLRLLKVVENLGV
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.1
0.33
1.3
59.7
46.7
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
88.9
0.88
0.7
81.1
31
Minor 5ss
30.6
-2.2
2.6
28.9
36
Minor BPS
59.4
0.37
1.7
74.55
41.8

Associated Gene:

Gene:
PRIM2
Ensembl Gene ID:
ENSAPLG00000003752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003862
87391796 - 87495200
103405