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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87393171_87395793_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87393171 - 87395793
Intron Length:
2623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
AATTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
GTTTTGGTAATT
Flanking Amino Acid:
HFILRLAYCQSEELRRWFLQ
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.3
77.1
37.8
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
80.8
0.69
0.8
74.5
35.3
Minor 5ss
39.9
-1.1
2.8
53.6
37.3
Minor BPS
48
-0
2.5
75.64
41.8

Associated Gene:

Gene:
PRIM2
Ensembl Gene ID:
ENSAPLG00000003752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003862
87391796 - 87495200
103405