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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87412628_87413476_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87412628 - 87413476
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTTTCTTCACT
Flanking Amino Acid:
TKVKEQMFYKVGLSDAVDLF
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
77.5
0.68
1
79.6
33
Major PPT
81.8
0.71
0.8
80.1
31.7
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
78.1
0.97
1.6
95.32
31.5

Associated Gene:

Gene:
PRIM2
Ensembl Gene ID:
ENSAPLG00000003752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003862
87391796 - 87495200
103405