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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87413615_87443653_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87413615 - 87443653
Intron Length:
30039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTACTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTCTCTTTACTT
Flanking Amino Acid:
YRQKLSKALALTARSLPSIQ
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
73.1
43.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.9
0.72
0.8
74.4
35.4
Minor 5ss
38.3
-1.3
3
51.2
45.1
Minor BPS
69
0.67
1.6
82.98
39.3

Associated Gene:

Gene:
PRIM2
Ensembl Gene ID:
ENSAPLG00000003752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003862
87391796 - 87495200
103405