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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87443722_87451293_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87443722 - 87451293
Intron Length:
7572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCATAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTATAC
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
ERLQPLLNHLSHSYIGPDYS
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.9
0.45
1.2
65
37.6
Major BPS
45.7
-0.2
1.2
40.6
39.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
41.7
-0.9
3.2
56.1
48.1
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PRIM2
Ensembl Gene ID:
ENSAPLG00000003752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003862
87391796 - 87495200
103405