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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87451367_87452330_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87451367 - 87452330
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TTTCTCTTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTTCTCTTGACA
Flanking Amino Acid:
GKISLEHIDALSVKSFPLCM
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
68.7
42
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
82.7
0.74
0.9
79.9
32.1
Minor 5ss
39.8
-1.1
3.1
61.7
42.2
Minor BPS
77.4
0.86
1.1
83.73
29.3

Associated Gene:

Gene:
PRIM2
Ensembl Gene ID:
ENSAPLG00000003752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003862
87391796 - 87495200
103405