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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87452517_87472365_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87452517 - 87472365
Intron Length:
19849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
GTATATATACTT
Flanking Amino Acid:
FIRGKVDADKFDKGYAYSIR
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
44.8
-0.3
1.9
63.42
40.9

Associated Gene:

Gene:
PRIM2
Ensembl Gene ID:
ENSAPLG00000003752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003862
87391796 - 87495200
103405