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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87474238_87488386_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87474238 - 87488386
Intron Length:
14149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GAAGCTTTAAAT
Flanking Amino Acid:
YKIPPSGIAQILDLVKGMHY
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.9
78.6
37.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.2
0.61
0.8
76.9
31.8
Minor 5ss
32.4
-2
3.4
46.7
48.6
Minor BPS
58
0.33
1.5
68.24
42.1

Associated Gene:

Gene:
PRIM2
Ensembl Gene ID:
ENSAPLG00000003752
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003862
87391796 - 87495200
103405