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Intron Name: Anas_platyrhynchos_platyrhynchos_3_87488456_87494972_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

87488456 - 87494972

Intron Length:

6517

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAAGTAGC

5'SS Class:

strong_major

3'SS Sequence:

TCATTTTGTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATAAT

U12 Branch Point Sequence:

TTTCCTTTCATT

Flanking Amino Acid:

CQKYFELTHDLDDIGFSLNH

Intron Amino Acid Position:

434

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

78.2

36.4

Major BPS

0.72

78.4

31.2

Major PPT

80.2

0.68

0.9

76.4

37.4

Minor 5ss

38.5

-1.3

2.8

50.4

39.2

Minor BPS

66.2

0.59

1.7

84.98

35.9

Associated Gene:

Gene:

PRIM2

Ensembl Gene ID:

ENSAPLG00000003752

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003862

87391796 - 87495200

103405