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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87528819_87539305_F

Intron Information:

Intron Rank:
135350
Intron Class:
major
Intron Phase:
Intron Coordinates:
87528819 - 87539305
Intron Length:
10487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAGCAT
U12 Branch Point Sequence:
CTTCCCTCCAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
49.2
-0
1.5
59.7
46.7
Major PPT
66.6
0.37
1
66.8
26.9
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
47
-0.2
2.1
62.51
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022827
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036362
87528363 - 87542393
14031