Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87539501_87541754_F

Intron Information:

Intron Rank:

135351

Intron Class:

major

Intron Phase:

Intron Coordinates:

87539501 - 87541754

Intron Length:

2254

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGTGTA

5'SS Class:

strong_major

3'SS Sequence:

CTTTGTTTTAAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCTAT

U12 Branch Point Sequence:

TTTGTTTTAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.3

0.78

0.9

77.5

32.8

Major BPS

68.8

0.47

1.3

66.7

41.7

Major PPT

77.3

0.61

77.9

34.4

Minor 5ss

29.4

-2.4

3.4

39.4

46.5

Minor BPS

62.1

0.24

1.6

67.62

40.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022827

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036362

87528363 - 87542393

14031