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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87714288_87714940_F

Intron Information:

Intron Rank:
134509
Intron Class:
major
Intron Phase:
Intron Coordinates:
87714288 - 87714940
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCAACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TCTTTTCCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
75
0.62
1
65.3
41.5
Major PPT
70.7
0.47
0.9
64
36.9
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
50.4
-0
1.9
66.52
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022308
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047540
87714223 - 87716699
2477