Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87796958_87813125_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

87796958 - 87813125

Intron Length:

16168

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCATT

5'SS Class:

strong_major

3'SS Sequence:

GAATCTTTTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATAAC

U12 Branch Point Sequence:

CTTATCTGAATC

Flanking Amino Acid:

YDNSYATQTQSVPEYYDYGH

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.2

1.02

0.8

90.9

28.7

Major BPS

70.1

0.5

70.3

31.9

Major PPT

75.3

0.57

65.8

44.8

Minor 5ss

45.3

-0.5

2.9

45.2

Minor BPS

59.5

0.28

1.5

67.41

38.4

Associated Gene:

Gene:

KHDRBS2

Ensembl Gene ID:

ENSAPLG00000013452

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014003

87778128 - 88120857

342730