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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87884367_87887118_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
87884367 - 87887118
Intron Length:
2752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGGTAA
5'SS Class:
major
3'SS Sequence:
TTGCTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TACACCTCAAAA
Flanking Amino Acid:
GIRVPPAAPSRGRGGAIPPP
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
69.7
32.2
Major BPS
68
0.45
1
57.8
39
Major PPT
71.8
0.49
0.9
65.1
36.4
Minor 5ss
36.7
-1.5
3.2
45.7
49.5
Minor BPS
53.9
0.12
1.7
63.43
42.1

Associated Gene:

Gene:
KHDRBS2
Ensembl Gene ID:
ENSAPLG00000013452
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014003
87778128 - 88120857
342730