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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_87887247_87947318_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
87887247 - 87947318
Intron Length:
60072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTACATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TATATTTTACAT
Flanking Amino Acid:
LEEIKKFLVPDYNDEIRQEQ
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
64.6
40.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.3
0.8
0.8
82.5
33.5
Minor 5ss
35.2
-1.7
3.3
49.2
41.2
Minor BPS
51
0.11
1.7
70.54
40.3

Associated Gene:

Gene:
KHDRBS2
Ensembl Gene ID:
ENSAPLG00000013452
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014003
87778128 - 88120857
342730