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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8793482_8806899_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8793482 - 8806899
Intron Length:
13418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATACG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTCAT
U12 Branch Point Sequence:
ACTCACTTGACG
Flanking Amino Acid:
CLDKRGSFFKLIDTIASEIG
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
36.9
Major BPS
63.4
0.33
1.2
65.3
41.5
Major PPT
77.9
0.63
0.8
69.8
36.6
Minor 5ss
35.4
-1.7
2.7
43.2
43.8
Minor BPS
56.1
0.05
1.6
59.64
41.9

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021743
8755717 - 8840228
84512
ENSAPLT00000044933
8755717 - 8840923
85207
ENSAPLT00000018188
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000015501
8793175 - 8840923
47749
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000013593
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110