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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88053548_88120766_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
88053548 - 88120766
Intron Length:
67219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGCTC
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTT
Flanking Amino Acid:
FVHAMRLLADEIEKFQGSEG
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
68.2
43
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.5
0.84
0.8
85.6
33.6
Minor 5ss
35.8
-1.6
3.5
51.7
45
Minor BPS
62.5
0.47
1.8
84.55
36.3

Associated Gene:

Gene:
KHDRBS2
Ensembl Gene ID:
ENSAPLG00000013452
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014003
87778128 - 88120857
342730