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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8814554_8815391_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8814554 - 8815391
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTACAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TTCTCTACAACA
Flanking Amino Acid:
MEILRAQPAGIFLVRKSARL
Intron Amino Acid Position:
598

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
74.8
0.56
0.9
70.7
33.4
Minor 5ss
34.8
-1.7
3
41.4
44.7
Minor BPS
57
0.22
1.8
72.45
39.6

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018188
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000015501
8793175 - 8840923
47749
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000013593
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110
ENSAPLT00000021743
8755717 - 8840228
84512
ENSAPLT00000044933
8755717 - 8840923
85207