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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88186719_88187905_R

Intron Information:

Intron Rank:
145678
Intron Class:
major
Intron Phase:
Intron Coordinates:
88186719 - 88187905
Intron Length:
1187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTATATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
GTTTCTATATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.1
0.77
0.8
81.2
35.3
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
55.6
0.25
1.9
77.48
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025769
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045170
88186493 - 88192059
5567