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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8819002_8822004_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8819002 - 8822004
Intron Length:
3003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGATGATTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTGACCTTAACA
Flanking Amino Acid:
ELEEIAQLGLNFWSSPANSN
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
70.4
0.46
1
66.9
43.9
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
74.9
0.78
1.3
76.04
41.3

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015501
8793175 - 8840923
47749
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110
ENSAPLT00000021743
8755717 - 8840228
84512
ENSAPLT00000044933
8755717 - 8840923
85207
ENSAPLT00000018188
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279