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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_88191856_88209379_R

Intron Information:

Intron Rank:
145677
Intron Class:
major
Intron Phase:
Intron Coordinates:
88191856 - 88209379
Intron Length:
17524

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
GATATTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTCTGTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.8
86
30.3
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
80.7
0.69
0.9
77.3
41.4
Minor 5ss
35.2
-1.7
3.8
55
49.2
Minor BPS
60.7
0.33
2
77.53
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025769
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035852
88160336 - 88209525
49190