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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8823136_8832305_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8823136 - 8832305
Intron Length:
9170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGAAAAT
U12 Branch Point Sequence:
AGAAAATCAGCT
Flanking Amino Acid:
IESLIPEDQIDVVLEKAMHK
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
82.1
31
Major BPS
48.6
-0
1.2
53.4
38.7
Major PPT
88.6
0.87
0.8
84.2
30.7
Minor 5ss
32.6
-2
3.1
42.1
45
Minor BPS
38.6
-0.7
1.9
52.48
40.9

Associated Gene:

Gene:
RIN2
Ensembl Gene ID:
ENSAPLG00000014865
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018188
8694950 - 8840228
145279
ENSAPLT00000036550
8694950 - 8840228
145279
ENSAPLT00000015501
8793175 - 8840923
47749
ENSAPLT00000025864
8694950 - 8840228
145279
ENSAPLT00000024235
8703119 - 8840228
137110
ENSAPLT00000021743
8755717 - 8840228
84512
ENSAPLT00000044933
8755717 - 8840923
85207